Variant report

Variant	rs6816673
Chromosome Location	chr4:103182760-103182761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10020497	1.00[CEU][hapmap]
rs10020659	1.00[CEU][hapmap]
rs1045155	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11938533	1.00[MEX][hapmap]
rs13434535	1.00[CEU][hapmap]
rs151392	0.82[ASW][hapmap];0.81[YRI][hapmap]
rs151393	0.82[ASW][hapmap];0.81[YRI][hapmap]
rs17032228	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs5019833	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58171826	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58928104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6836807	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs6837489	0.82[AMR][1000 genomes]
rs72924814	0.82[AMR][1000 genomes]
rs7654435	1.00[CEU][hapmap]
rs7681437	1.00[CEU][hapmap]
rs9705	0.82[ASW][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1008680	chr4:103153709-103206555	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1011868	chr4:103158581-103206555	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999012	chr4:103162076-103206555	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1012254	chr4:103174196-103191787	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1014733	chr4:103174196-103206240	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1002129	chr4:103174196-103206555	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1013313	chr4:103175700-103206555	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1013439	chr4:103178743-103191787	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1003825	chr4:103179197-103206555	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv998689	chr4:103179788-103206555	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103179000-103184000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:103179200-103202200	Weak transcription	Lung	lung
3	chr4:103179400-103188800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:103179400-103221000	Weak transcription	K562	blood
5	chr4:103180400-103200400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:103180600-103184400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:103181000-103183400	Weak transcription	Hela-S3	cervix
8	chr4:103181000-103185400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:103181000-103188200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:103181400-103197600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:103181600-103183200	Weak transcription	Dnd41	blood
12	chr4:103181600-103210800	Weak transcription	Liver	Liver
13	chr4:103181800-103230400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:103182000-103185000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:103182000-103255400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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