Variant report

Variant	rs68186165
Chromosome Location	chr5:35650794-35650795
allele	CA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10063459	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10072883	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10472977	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11748781	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12517628	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12518827	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1353255	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1389845	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1494584	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2035992	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2035993	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2035994	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2172755	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2270558	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs286445	0.82[ASN][1000 genomes]
rs286446	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs286447	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4703366	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4703367	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4703420	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4703421	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4703423	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55962008	0.82[ASN][1000 genomes]
rs6863096	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6891905	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6896510	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6897513	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7703256	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7706719	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7717770	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9292598	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs961149	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs989063	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35618600-35653800	Weak transcription	Lung	lung
2	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
3	chr5:35619000-35651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:35619000-35651600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:35619000-35652000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:35619200-35651400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr5:35619400-35652200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:35627200-35656600	Weak transcription	Osteobl	bone
9	chr5:35630400-35662400	Weak transcription	Aorta	Aorta
10	chr5:35630600-35663400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
12	chr5:35632600-35652400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr5:35634800-35651200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:35634800-35651200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr5:35634800-35658200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr5:35634800-35658200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr5:35634800-35673200	Weak transcription	Brain Anterior Caudate	brain
18	chr5:35635000-35652000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr5:35635400-35651000	Weak transcription	Dnd41	blood
20	chr5:35635600-35651200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr5:35635600-35660400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:35635600-35665400	Weak transcription	Fetal Intestine Small	intestine
23	chr5:35635800-35664000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:35638600-35651600	Weak transcription	Primary T cells from cord blood	blood
25	chr5:35639000-35655600	Weak transcription	Adipose Nuclei	Adipose
26	chr5:35639400-35664600	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr5:35640600-35664000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr5:35642600-35673000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr5:35644000-35654400	Weak transcription	Fetal Intestine Large	intestine
30	chr5:35645200-35662200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr5:35645200-35663800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr5:35645200-35673600	Weak transcription	Fetal Kidney	kidney
33	chr5:35648200-35663400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr5:35650400-35651200	Strong transcription	Ovary	ovary

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