Variant report

Variant	rs989063
Chromosome Location	chr5:35645418-35645419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10042581	0.85[ASN][1000 genomes]
rs10042632	0.90[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs10042664	0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs10043903	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10058349	0.85[ASN][1000 genomes]
rs10059848	0.85[ASN][1000 genomes]
rs10060167	0.85[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10063459	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10070515	0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs10072883	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1013156	0.82[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10472262	0.85[ASN][1000 genomes]
rs10472977	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11748781	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12172997	0.85[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12514664	0.84[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs12517628	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12518827	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1353255	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389845	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494584	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035992	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035993	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035994	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172754	0.91[YRI][hapmap];0.80[AFR][1000 genomes]
rs2172755	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2270558	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286445	0.84[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs286446	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286447	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35297265	0.86[ASN][1000 genomes]
rs455000	0.91[YRI][hapmap]
rs4703366	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703367	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703421	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55962008	0.96[ASN][1000 genomes]
rs6414876	0.84[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs6451206	0.84[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs6451207	0.85[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs68186165	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6862856	0.88[ASN][1000 genomes]
rs6863096	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6868260	0.89[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs6873927	0.86[ASN][1000 genomes]
rs6874120	0.88[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs6874194	0.84[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs6878388	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs6884001	0.86[ASN][1000 genomes]
rs6889546	0.88[ASN][1000 genomes]
rs6891905	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6896510	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6897434	0.84[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs6897513	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898356	0.84[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7442968	0.84[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7448754	0.85[ASN][1000 genomes]
rs7448971	0.84[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7703256	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7706444	0.91[YRI][hapmap];0.80[AFR][1000 genomes]
rs7706719	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7709682	0.86[ASN][1000 genomes]
rs7709794	0.86[ASN][1000 genomes]
rs7713174	0.84[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7717770	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7719314	0.84[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7719458	0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7733039	0.84[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs9292598	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9292599	0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs9292600	0.90[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs9292601	0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs9292603	0.84[ASN][1000 genomes]
rs9292604	0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs9292605	0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs9292606	0.84[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs961149	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs989064	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35618600-35646800	Weak transcription	Spleen	Spleen
2	chr5:35618600-35653800	Weak transcription	Lung	lung
3	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
4	chr5:35619000-35651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr5:35619000-35651600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr5:35619000-35652000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:35619200-35645800	Weak transcription	Small Intestine	intestine
8	chr5:35619200-35646000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr5:35619200-35649800	Weak transcription	Hela-S3	cervix
10	chr5:35619200-35651400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:35619400-35652200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:35625600-35650000	Weak transcription	Right Ventricle	heart
13	chr5:35627200-35656600	Weak transcription	Osteobl	bone
14	chr5:35630400-35662400	Weak transcription	Aorta	Aorta
15	chr5:35630600-35663400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
17	chr5:35632600-35652400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr5:35634800-35651200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr5:35634800-35651200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:35634800-35658200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr5:35634800-35658200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr5:35634800-35673200	Weak transcription	Brain Anterior Caudate	brain
23	chr5:35635000-35652000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr5:35635400-35651000	Weak transcription	Dnd41	blood
25	chr5:35635600-35648800	Weak transcription	Gastric	stomach
26	chr5:35635600-35651200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr5:35635600-35660400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:35635600-35665400	Weak transcription	Fetal Intestine Small	intestine
29	chr5:35635800-35664000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr5:35636000-35649800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:35638600-35651600	Weak transcription	Primary T cells from cord blood	blood
32	chr5:35639000-35655600	Weak transcription	Adipose Nuclei	Adipose
33	chr5:35639400-35664600	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr5:35640600-35664000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr5:35640800-35647200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr5:35642600-35673000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr5:35642800-35645600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr5:35642800-35647800	Weak transcription	Liver	Liver
39	chr5:35644000-35654400	Weak transcription	Fetal Intestine Large	intestine
40	chr5:35645000-35650400	Weak transcription	Ovary	ovary
41	chr5:35645200-35647200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr5:35645200-35649400	Weak transcription	Fetal Lung	lung
43	chr5:35645200-35662200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr5:35645200-35663800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:35645200-35673600	Weak transcription	Fetal Kidney	kidney

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