Variant report

Variant	rs68189385
Chromosome Location	chr2:183024626-183024627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:183022565..183024247-chr2:183024549..183026157,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10930994	0.80[EUR][1000 genomes]
rs1344773	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1347079	0.81[EUR][1000 genomes]
rs1432517	0.80[EUR][1000 genomes]
rs1432520	0.81[EUR][1000 genomes]
rs1432521	0.80[EUR][1000 genomes]
rs1432533	0.81[EUR][1000 genomes]
rs17366198	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17366503	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17457164	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17457303	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17457323	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17595927	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1835880	0.81[EUR][1000 genomes]
rs1864847	0.81[EUR][1000 genomes]
rs1864851	0.87[EUR][1000 genomes]
rs2128045	0.81[EUR][1000 genomes]
rs2128046	0.81[EUR][1000 genomes]
rs2128047	0.81[EUR][1000 genomes]
rs2170402	0.80[EUR][1000 genomes]
rs2170403	0.81[EUR][1000 genomes]
rs2195880	0.84[ASN][1000 genomes]
rs2217614	0.84[EUR][1000 genomes]
rs2276612	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2368255	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2568661	0.81[EUR][1000 genomes]
rs2568664	0.81[EUR][1000 genomes]
rs2568667	0.81[EUR][1000 genomes]
rs2568682	0.82[EUR][1000 genomes]
rs2568687	0.83[EUR][1000 genomes]
rs2623422	0.84[EUR][1000 genomes]
rs2623423	0.84[EUR][1000 genomes]
rs2623435	0.81[EUR][1000 genomes]
rs2623437	0.81[EUR][1000 genomes]
rs300885	0.83[EUR][1000 genomes]
rs4503956	0.81[EUR][1000 genomes]
rs55747252	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56282499	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56301405	0.81[ASN][1000 genomes]
rs57801137	0.80[EUR][1000 genomes]
rs711808	0.83[EUR][1000 genomes]
rs72895040	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs753289	0.82[EUR][1000 genomes]
rs7581170	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs833133	0.81[EUR][1000 genomes]
rs833135	0.82[EUR][1000 genomes]
rs833140	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183013600-183048000	Weak transcription	Aorta	Aorta
2	chr2:183019400-183048200	Weak transcription	Left Ventricle	heart
3	chr2:183021400-183028000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:183021400-183029200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:183024000-183025400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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