Variant report

Variant	rs72895040
Chromosome Location	chr2:183012852-183012853
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10930994	0.82[EUR][1000 genomes]
rs13034133	0.80[EUR][1000 genomes]
rs1344773	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1347079	0.82[EUR][1000 genomes]
rs1432517	0.82[EUR][1000 genomes]
rs1432518	0.81[EUR][1000 genomes]
rs1432520	0.82[EUR][1000 genomes]
rs1432521	0.82[EUR][1000 genomes]
rs1432533	0.82[EUR][1000 genomes]
rs1594614	0.80[EUR][1000 genomes]
rs17366198	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17366503	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17457164	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17457303	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17457323	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17595927	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1835880	0.82[EUR][1000 genomes]
rs1864847	0.82[EUR][1000 genomes]
rs1864848	0.81[EUR][1000 genomes]
rs1864849	0.81[EUR][1000 genomes]
rs1864850	0.81[EUR][1000 genomes]
rs1864851	0.89[EUR][1000 genomes]
rs1864852	0.81[EUR][1000 genomes]
rs2128045	0.82[EUR][1000 genomes]
rs2128046	0.82[EUR][1000 genomes]
rs2128047	0.82[EUR][1000 genomes]
rs2170402	0.82[EUR][1000 genomes]
rs2170403	0.82[EUR][1000 genomes]
rs2195880	0.84[AMR][1000 genomes]
rs2217614	0.85[EUR][1000 genomes]
rs2276612	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2368255	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2368276	0.81[EUR][1000 genomes]
rs2568660	0.80[EUR][1000 genomes]
rs2568661	0.82[EUR][1000 genomes]
rs2568663	0.81[EUR][1000 genomes]
rs2568664	0.82[EUR][1000 genomes]
rs2568667	0.82[EUR][1000 genomes]
rs2568672	0.81[EUR][1000 genomes]
rs2568673	0.81[EUR][1000 genomes]
rs2568674	0.81[EUR][1000 genomes]
rs2568676	0.81[EUR][1000 genomes]
rs2568682	0.82[EUR][1000 genomes]
rs2568687	0.84[EUR][1000 genomes]
rs2623418	0.81[EUR][1000 genomes]
rs2623422	0.85[EUR][1000 genomes]
rs2623423	0.85[EUR][1000 genomes]
rs2623435	0.82[EUR][1000 genomes]
rs2623437	0.82[EUR][1000 genomes]
rs300885	0.84[EUR][1000 genomes]
rs3754929	0.80[EUR][1000 genomes]
rs4503956	0.82[EUR][1000 genomes]
rs4666819	0.84[AMR][1000 genomes]
rs55747252	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56282499	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56301405	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56851890	0.83[AMR][1000 genomes]
rs57801137	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6740401	0.81[EUR][1000 genomes]
rs68189385	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs711808	0.84[EUR][1000 genomes]
rs753289	0.82[EUR][1000 genomes]
rs7571503	0.81[EUR][1000 genomes]
rs7581170	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs833133	0.82[EUR][1000 genomes]
rs833135	0.82[EUR][1000 genomes]
rs833140	0.81[EUR][1000 genomes]
rs833156	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182998600-183024000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:182999200-183016000	Weak transcription	Gastric	stomach
3	chr2:183002400-183013000	Weak transcription	Left Ventricle	heart
4	chr2:183009400-183018200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:183009600-183013200	Weak transcription	Osteobl	bone
6	chr2:183009800-183013000	Weak transcription	Aorta	Aorta
7	chr2:183009800-183013000	Weak transcription	Pancreas	Pancrea
8	chr2:183009800-183013000	Weak transcription	Right Atrium	heart
9	chr2:183010000-183013000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:183010000-183013000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:183010000-183013000	Weak transcription	Hela-S3	cervix
12	chr2:183010000-183013000	Weak transcription	HSMM	muscle
13	chr2:183010000-183013000	Weak transcription	HSMMtube	muscle
14	chr2:183010000-183013000	Weak transcription	NH-A	brain
15	chr2:183010000-183013200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:183010600-183013000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:183012800-183013600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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