Variant report

Variant	rs7581170
Chromosome Location	chr2:183031527-183031528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10201929	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10202082	0.89[EUR][1000 genomes]
rs10930994	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13034133	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1344773	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1347079	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1432517	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1432518	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1432519	0.87[EUR][1000 genomes]
rs1432520	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1432521	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1432533	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1594614	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17366198	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17366503	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17457164	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17457303	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17457323	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17595927	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1835880	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1835881	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1864847	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1864848	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1864849	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1864850	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1864851	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1864852	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1864854	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1988750	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2116636	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2128045	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2128046	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2128047	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2170402	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2170403	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2195880	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2217614	0.84[EUR][1000 genomes]
rs2276612	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2368255	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2368276	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2568660	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2568661	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2568663	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2568664	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2568667	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2568670	0.89[EUR][1000 genomes]
rs2568672	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2568673	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2568674	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2568676	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2568682	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2568687	0.83[EUR][1000 genomes]
rs2623418	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2623422	0.84[EUR][1000 genomes]
rs2623423	0.84[EUR][1000 genomes]
rs2623435	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2623437	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300885	0.83[EUR][1000 genomes]
rs3754929	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4503956	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4666819	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55747252	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56282499	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56301405	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57801137	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6740401	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68189385	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs711808	0.83[EUR][1000 genomes]
rs72895040	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs753289	0.81[EUR][1000 genomes]
rs7571503	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs833133	0.80[EUR][1000 genomes]
rs833135	0.81[EUR][1000 genomes]
rs964757	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs964758	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183013600-183048000	Weak transcription	Aorta	Aorta
2	chr2:183019400-183048200	Weak transcription	Left Ventricle	heart
3	chr2:183025600-183046000	Weak transcription	Fetal Stomach	stomach
4	chr2:183028400-183032000	Enhancers	Fetal Intestine Small	intestine
5	chr2:183028800-183032200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:183030400-183034800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:183030800-183032000	Weak transcription	HSMMtube	muscle
8	chr2:183031200-183032200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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