Variant report

Variant	rs6822384
Chromosome Location	chr4:88171749-88171750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1037813	1.00[ASN][1000 genomes]
rs11945520	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13103234	1.00[ASN][1000 genomes]
rs13108043	1.00[ASN][1000 genomes]
rs13134084	1.00[ASN][1000 genomes]
rs17012304	1.00[ASN][1000 genomes]
rs17030453	1.00[ASN][1000 genomes]
rs17604937	1.00[ASN][1000 genomes]
rs17668731	1.00[ASN][1000 genomes]
rs17668952	1.00[ASN][1000 genomes]
rs17703261	1.00[ASN][1000 genomes]
rs2230858	1.00[ASN][1000 genomes]
rs35658582	1.00[ASN][1000 genomes]
rs366327	1.00[ASN][1000 genomes]
rs4079	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4305486	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4505787	0.92[EUR][1000 genomes]
rs56656813	1.00[ASN][1000 genomes]
rs57455613	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57954253	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58336541	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59054114	0.92[EUR][1000 genomes]
rs59395199	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59526367	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62306540	1.00[ASN][1000 genomes]
rs6531974	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817981	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834947	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846149	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846352	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850337	1.00[ASN][1000 genomes]
rs71607404	1.00[ASN][1000 genomes]
rs72875519	1.00[ASN][1000 genomes]
rs73839171	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662471	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664479	1.00[ASN][1000 genomes]
rs7668285	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676494	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686034	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997750	chr4:87933945-88264127	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1007020	chr4:88046263-88235018	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537169	chr4:88046263-88235018	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1014846	chr4:88151614-88188335	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv537170	chr4:88151614-88188335	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv516203	chr4:88167878-88228228	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88171200-88172200	Enhancers	Rectal Mucosa Donor 29	rectum
2	chr4:88171400-88172800	Enhancers	Liver	Liver
3	chr4:88171400-88173400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:88171400-88174000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links