Variant report

Variant	rs6826222
Chromosome Location	chr4:103111761-103111762
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs58690384	0.85[AMR][1000 genomes]
rs59510424	1.00[EUR][1000 genomes]
rs6532983	1.00[EUR][1000 genomes]
rs6841991	1.00[EUR][1000 genomes]
rs6848531	0.85[AMR][1000 genomes]
rs72922973	1.00[EUR][1000 genomes]
rs72924810	1.00[EUR][1000 genomes]
rs72924814	1.00[EUR][1000 genomes]
rs72929940	1.00[EUR][1000 genomes]
rs7659129	0.85[AMR][1000 genomes]
rs7669067	0.85[AMR][1000 genomes]
rs7676629	0.85[AMR][1000 genomes]
rs7677556	0.85[AMR][1000 genomes]
rs7680297	1.00[EUR][1000 genomes]
rs7680807	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103110800-103112200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:103110800-103112200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:103110800-103112200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:103111000-103112000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:103111000-103112200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:103111200-103111800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr4:103111200-103112200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:103111400-103111800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:103111400-103112000	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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