Variant report

Variant	rs6841991
Chromosome Location	chr4:103082967-103082968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10020497	1.00[CEU][hapmap]
rs10020659	1.00[CEU][hapmap]
rs1045155	1.00[CEU][hapmap]
rs13434535	1.00[CEU][hapmap]
rs59510424	1.00[EUR][1000 genomes]
rs6532983	1.00[EUR][1000 genomes]
rs6826222	1.00[EUR][1000 genomes]
rs6836807	1.00[CEU][hapmap]
rs72922973	1.00[EUR][1000 genomes]
rs72924810	1.00[EUR][1000 genomes]
rs72924814	1.00[EUR][1000 genomes]
rs72929940	1.00[EUR][1000 genomes]
rs7654435	1.00[CEU][hapmap]
rs7680297	1.00[EUR][1000 genomes]
rs7680807	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103072400-103084800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:103079800-103084600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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