Variant report

Variant	rs7680807
Chromosome Location	chr4:103061135-103061136
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10020497	1.00[CEU][hapmap]
rs10020659	1.00[CEU][hapmap]
rs1045155	1.00[CEU][hapmap]
rs13434535	1.00[CEU][hapmap]
rs59510424	1.00[EUR][1000 genomes]
rs6532983	1.00[EUR][1000 genomes]
rs6826222	1.00[EUR][1000 genomes]
rs6836807	1.00[CEU][hapmap]
rs6841991	1.00[EUR][1000 genomes]
rs72922973	1.00[EUR][1000 genomes]
rs72924810	1.00[EUR][1000 genomes]
rs72924814	1.00[EUR][1000 genomes]
rs72929940	1.00[EUR][1000 genomes]
rs7654435	1.00[CEU][hapmap]
rs7680297	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103059600-103061200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:103059600-103061400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:103059600-103061800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:103059800-103061600	Enhancers	Aorta	Aorta
5	chr4:103059800-103061600	Enhancers	HMEC	breast
6	chr4:103059800-103061600	Enhancers	NHEK	skin
7	chr4:103059800-103062000	Enhancers	Hela-S3	cervix
8	chr4:103060000-103061400	Enhancers	NH-A	brain
9	chr4:103060400-103061600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:103060400-103061600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:103060400-103062000	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr4:103060600-103061200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:103061000-103061600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:103061000-103062200	Enhancers	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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