Variant report

Variant	rs6832010
Chromosome Location	chr4:93523206-93523207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10012693	0.82[EUR][1000 genomes]
rs1031319	0.81[ASN][1000 genomes]
rs10516910	0.86[ASN][1000 genomes]
rs10856893	0.86[ASN][1000 genomes]
rs10856894	0.86[ASN][1000 genomes]
rs10856895	0.86[ASN][1000 genomes]
rs11097340	0.81[ASN][1000 genomes]
rs11097342	0.89[ASN][1000 genomes]
rs11097346	0.85[EUR][1000 genomes]
rs11934648	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935893	0.84[ASN][1000 genomes]
rs11937751	0.85[EUR][1000 genomes]
rs12500504	0.86[ASN][1000 genomes]
rs12501529	0.84[ASN][1000 genomes]
rs12504452	0.89[ASN][1000 genomes]
rs12508312	0.86[ASN][1000 genomes]
rs12508332	0.84[ASN][1000 genomes]
rs12508369	0.86[ASN][1000 genomes]
rs12508403	0.86[ASN][1000 genomes]
rs12641482	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12643761	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13143245	0.82[EUR][1000 genomes]
rs1376117	0.82[ASN][1000 genomes]
rs1450500	0.82[ASN][1000 genomes]
rs1450502	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1479325	0.83[EUR][1000 genomes]
rs16996340	0.83[ASN][1000 genomes]
rs17019608	0.86[ASN][1000 genomes]
rs17019627	0.86[ASN][1000 genomes]
rs17019635	0.83[ASN][1000 genomes]
rs17019639	0.85[ASN][1000 genomes]
rs17019672	0.86[ASN][1000 genomes]
rs17842180	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2012741	0.81[ASN][1000 genomes]
rs2169945	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2870639	0.85[ASN][1000 genomes]
rs2870640	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2870641	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34047273	0.83[ASN][1000 genomes]
rs34191803	0.84[ASN][1000 genomes]
rs34464836	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34612832	0.84[ASN][1000 genomes]
rs35266197	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36029067	0.83[ASN][1000 genomes]
rs57113788	0.86[ASN][1000 genomes]
rs57939475	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62307820	0.81[ASN][1000 genomes]
rs62310102	0.86[ASN][1000 genomes]
rs62310103	0.86[ASN][1000 genomes]
rs62310104	0.86[ASN][1000 genomes]
rs62310105	0.86[ASN][1000 genomes]
rs62310106	0.82[ASN][1000 genomes]
rs62310107	0.86[ASN][1000 genomes]
rs62310108	0.83[ASN][1000 genomes]
rs6532376	0.84[ASN][1000 genomes]
rs6532377	0.84[ASN][1000 genomes]
rs6532378	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6829672	0.84[ASN][1000 genomes]
rs6830091	0.86[ASN][1000 genomes]
rs6832040	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6851143	0.86[ASN][1000 genomes]
rs6851174	0.83[ASN][1000 genomes]
rs6851509	0.83[ASN][1000 genomes]
rs6856270	0.86[ASN][1000 genomes]
rs6856480	0.86[ASN][1000 genomes]
rs7661958	0.81[ASN][1000 genomes]
rs7662234	0.81[ASN][1000 genomes]
rs7662251	0.81[ASN][1000 genomes]
rs7663643	0.84[ASN][1000 genomes]
rs7663835	0.86[ASN][1000 genomes]
rs7667310	0.86[ASN][1000 genomes]
rs7668740	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7672511	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7685707	0.81[ASN][1000 genomes]
rs7686323	0.86[ASN][1000 genomes]
rs7686351	0.84[ASN][1000 genomes]
rs7686533	0.86[ASN][1000 genomes]
rs7686627	0.84[ASN][1000 genomes]
rs7688395	0.81[ASN][1000 genomes]
rs7688913	0.86[ASN][1000 genomes]
rs7688929	0.85[ASN][1000 genomes]
rs7688955	0.84[ASN][1000 genomes]
rs7689379	0.84[ASN][1000 genomes]
rs7690138	0.86[ASN][1000 genomes]
rs7690473	0.86[ASN][1000 genomes]
rs7691365	0.84[ASN][1000 genomes]
rs7692235	0.81[ASN][1000 genomes]
rs7695324	0.84[ASN][1000 genomes]
rs899469	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs921354	0.84[ASN][1000 genomes]
rs9684124	0.86[ASN][1000 genomes]
rs9685335	0.81[ASN][1000 genomes]
rs9685970	0.86[ASN][1000 genomes]
rs970405	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9968392	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948712	chr4:93007985-93740409	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1005500	chr4:93359923-93590452	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv537184	chr4:93359923-93590452	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv879605	chr4:93376231-93740409	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1014431	chr4:93464326-93618241	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv537185	chr4:93464326-93618241	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv879608	chr4:93480717-93612903	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv879609	chr4:93489287-93596167	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv830008	chr4:93510957-93685935	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93495600-93535600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:93496400-93540200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:93497800-93524200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:93502800-93531400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:93510400-93523800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:93510800-93539600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:93520400-93524200	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:93521600-93524600	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr4:93522000-93523800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:93522400-93525600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:93522600-93534000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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