Variant report

Variant	rs9685335
Chromosome Location	chr8:87967778-87967779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1031319	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516910	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10856893	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10856894	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10856895	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11097340	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11097342	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11934648	0.81[ASN][1000 genomes]
rs11935893	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12500504	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12501529	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12504452	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12508312	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12508332	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12508369	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12508403	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1376117	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1450500	0.98[ASN][1000 genomes]
rs16996340	0.93[ASN][1000 genomes]
rs17019562	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17019608	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17019627	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17019635	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17019639	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17019672	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2012741	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2870639	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34047273	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34191803	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34612832	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs36029067	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4263360	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57113788	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62307820	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62310102	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62310103	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62310104	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62310105	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62310106	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62310107	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62310108	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6532376	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6532377	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6829016	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6829672	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6830091	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6832010	0.81[ASN][1000 genomes]
rs6832040	0.81[ASN][1000 genomes]
rs6851143	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6851174	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6851509	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6856270	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6856480	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7661849	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7661958	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662234	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662251	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7663643	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7663835	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7667310	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7672511	0.81[ASN][1000 genomes]
rs7685707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686323	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7686351	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7686533	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7686627	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7688395	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688913	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7688929	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7688955	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7689379	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7690138	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7690473	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7691365	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7692235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695324	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs921354	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9684124	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9685970	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817372	chr8:87746712-88292389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015760	chr8:87750555-88304604	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv831383	chr8:87827274-88004897	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1020699	chr8:87880120-88734779	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv539663	chr8:87880120-88734779	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3395182	chr8:87963885-87993322	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3414235	chr8:87963885-88009182	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87965200-87972000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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