Variant report

Variant	rs62307820
Chromosome Location	chr4:93456980-93456981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1031319	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10516910	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10856893	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10856894	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10856895	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11097340	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097342	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11934648	0.81[ASN][1000 genomes]
rs11935893	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12500504	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12501529	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12504452	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12508312	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12508332	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12508369	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12508403	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1376117	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1450500	0.96[ASN][1000 genomes]
rs16996340	0.93[ASN][1000 genomes]
rs17019562	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17019608	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17019627	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17019635	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17019639	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17019672	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2012741	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2870639	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34047273	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34191803	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34612832	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs36029067	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4263360	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57113788	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62310102	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62310103	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62310104	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62310105	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62310106	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62310107	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62310108	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6532376	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6532377	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6829016	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6829672	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6830091	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6832010	0.81[ASN][1000 genomes]
rs6832040	0.81[ASN][1000 genomes]
rs6851143	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6851174	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6851509	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6856270	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6856480	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7661849	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7661958	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7662234	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7662251	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7663643	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7663835	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7667310	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7685707	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7686323	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7686351	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7686533	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7686627	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7688395	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7688913	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7688929	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7688955	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7689379	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7690138	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7690473	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7691365	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7692235	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7695324	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs921354	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9684124	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9685335	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9685970	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948712	chr4:93007985-93740409	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv997925	chr4:93270083-93464386	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv537183	chr4:93270083-93464386	Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1005500	chr4:93359923-93590452	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv537184	chr4:93359923-93590452	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv879605	chr4:93376231-93740409	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1006957	chr4:93389054-93511561	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv879606	chr4:93391251-93479275	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1013199	chr4:93395509-93511052	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv594869	chr4:93434136-93480717	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv879607	chr4:93434872-93515166	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93447000-93457600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:93450800-93458000	Weak transcription	Fetal Lung	lung
3	chr4:93456400-93457200	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:93456600-93457200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:93456600-93457400	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr4:93456800-93457200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:93456800-93457200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr4:93456800-93457200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr4:93456800-93457200	ZNF genes & repeats	Pancreas	Pancrea
10	chr4:93456800-93457400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chr4:93456800-93457400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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