Variant report

Variant	rs6833215
Chromosome Location	chr4:22671774-22671775
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:22516555..22518423-chr4:22670641..22673303,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152990	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11939160	0.97[EUR][1000 genomes]
rs12500024	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12501288	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12501513	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12512285	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12640382	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16872876	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16872878	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1843486	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35819520	0.88[EUR][1000 genomes]
rs60749274	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6448174	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6448175	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6832682	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6856346	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73801118	0.97[EUR][1000 genomes]
rs73801147	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73801148	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73801149	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73801150	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73801151	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7655837	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7656016	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7657970	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7658624	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7679304	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7689638	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7696375	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22663200-22674800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:22669200-22673800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:22669400-22672600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:22669800-22671800	Enhancers	Primary B cells from cord blood	blood
5	chr4:22670200-22674200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr4:22670400-22678600	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr4:22670600-22671800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr4:22670600-22672000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr4:22670600-22681800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:22670800-22672600	Weak transcription	Fetal Heart	heart
11	chr4:22670800-22672800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:22670800-22673800	Enhancers	Primary T cells from cord blood	blood
13	chr4:22670800-22673800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr4:22670800-22673800	Weak transcription	Fetal Thymus	thymus
15	chr4:22671400-22672600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:22671400-22672600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr4:22671600-22672200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:22671600-22672600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:22671600-22673800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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