Variant report

Variant	rs7656016
Chromosome Location	chr4:22668888-22668889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11939160	0.97[EUR][1000 genomes]
rs12500024	0.92[EUR][1000 genomes]
rs12501288	0.92[EUR][1000 genomes]
rs12501513	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12512285	0.92[EUR][1000 genomes]
rs12640382	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16872876	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16872878	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1843486	0.92[EUR][1000 genomes]
rs35819520	0.88[EUR][1000 genomes]
rs60749274	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6448174	0.92[EUR][1000 genomes]
rs6448175	0.92[EUR][1000 genomes]
rs6832682	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6833215	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6856346	0.92[EUR][1000 genomes]
rs73801118	0.97[EUR][1000 genomes]
rs73801147	0.92[EUR][1000 genomes]
rs73801148	0.92[EUR][1000 genomes]
rs73801149	0.92[EUR][1000 genomes]
rs73801150	0.92[EUR][1000 genomes]
rs73801151	0.92[EUR][1000 genomes]
rs7655837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7657970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7658624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7679304	0.92[EUR][1000 genomes]
rs7689638	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7696375	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22663200-22674800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:22665800-22670000	Weak transcription	Fetal Intestine Small	intestine
3	chr4:22666000-22669200	Weak transcription	Liver	Liver
4	chr4:22668000-22669400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr4:22668000-22670800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr4:22668600-22669400	Enhancers	Placenta	Placenta
7	chr4:22668800-22669000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:22668800-22669000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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