Variant report

Variant	rs7696375
Chromosome Location	chr4:22667998-22667999
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11939160	0.97[EUR][1000 genomes]
rs12500024	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12501288	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12501513	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12512285	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12640382	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16872876	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16872878	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1843486	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35819520	0.88[EUR][1000 genomes]
rs60749274	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6448174	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6448175	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6832682	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6833215	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6856346	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73801118	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73801147	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73801148	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73801149	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73801150	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73801151	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7655837	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656016	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7657970	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7658624	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7679304	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7689638	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22663200-22668000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:22663200-22668600	Weak transcription	Placenta	Placenta
3	chr4:22663200-22674800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:22663800-22668400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:22664000-22668200	Weak transcription	NHEK	skin
6	chr4:22665800-22670000	Weak transcription	Fetal Intestine Small	intestine
7	chr4:22666000-22669200	Weak transcription	Liver	Liver

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