Variant report

Variant	rs6836362
Chromosome Location	chr4:22484427-22484428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr4:22484201-22484617	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
GPR125	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10000829	1.00[EUR][1000 genomes]
rs10004678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10006549	1.00[EUR][1000 genomes]
rs10012247	1.00[EUR][1000 genomes]
rs10013414	1.00[EUR][1000 genomes]
rs10013902	1.00[EUR][1000 genomes]
rs10017087	1.00[EUR][1000 genomes]
rs10019604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021864	1.00[EUR][1000 genomes]
rs10029008	1.00[EUR][1000 genomes]
rs10029089	1.00[EUR][1000 genomes]
rs10029265	1.00[EUR][1000 genomes]
rs10938900	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11944057	1.00[EUR][1000 genomes]
rs28414141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28426972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28490882	1.00[EUR][1000 genomes]
rs28501220	1.00[EUR][1000 genomes]
rs28518171	1.00[EUR][1000 genomes]
rs28521540	1.00[EUR][1000 genomes]
rs28542982	1.00[EUR][1000 genomes]
rs28591328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28645358	1.00[EUR][1000 genomes]
rs28660699	1.00[EUR][1000 genomes]
rs28667991	1.00[EUR][1000 genomes]
rs28698249	1.00[EUR][1000 genomes]
rs28703830	1.00[EUR][1000 genomes]
rs28729399	1.00[EUR][1000 genomes]
rs28775576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28787887	1.00[EUR][1000 genomes]
rs28798753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28839846	1.00[EUR][1000 genomes]
rs28882371	1.00[EUR][1000 genomes]
rs34198330	1.00[EUR][1000 genomes]
rs59046669	1.00[EUR][1000 genomes]
rs6448148	1.00[EUR][1000 genomes]
rs6840912	1.00[EUR][1000 genomes]
rs6846776	1.00[EUR][1000 genomes]
rs73123531	1.00[EUR][1000 genomes]
rs73123532	1.00[EUR][1000 genomes]
rs73123536	1.00[EUR][1000 genomes]
rs7657782	1.00[EUR][1000 genomes]
rs7662891	1.00[EUR][1000 genomes]
rs9654097	1.00[EUR][1000 genomes]
rs980589	1.00[EUR][1000 genomes]
rs9992606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9993875	1.00[EUR][1000 genomes]
rs9995752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv878752	chr4:22414023-22501043	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22420600-22488000	Weak transcription	Aorta	Aorta
2	chr4:22450400-22493200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:22456800-22485000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:22462000-22493200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:22472600-22486200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:22473200-22487400	Weak transcription	Right Ventricle	heart
7	chr4:22474200-22486200	Weak transcription	Fetal Stomach	stomach
8	chr4:22475000-22484800	Weak transcription	Fetal Intestine Large	intestine
9	chr4:22475000-22489400	Weak transcription	Lung	lung
10	chr4:22475200-22486000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:22476600-22485200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:22476600-22487200	Weak transcription	Small Intestine	intestine
13	chr4:22477000-22484600	Weak transcription	Hela-S3	cervix
14	chr4:22477000-22484800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:22477000-22485000	Weak transcription	A549	lung
16	chr4:22477800-22489000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr4:22478000-22484600	Weak transcription	HepG2	liver
18	chr4:22479400-22484600	Weak transcription	Fetal Lung	lung
19	chr4:22479600-22485000	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:22479800-22484600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:22479800-22485000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:22480200-22485200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:22480400-22484800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr4:22480400-22485400	Weak transcription	Fetal Intestine Small	intestine
25	chr4:22480400-22485600	Weak transcription	Primary T cells from cord blood	blood
26	chr4:22482200-22488800	Enhancers	HMEC	breast
27	chr4:22482400-22485400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:22482400-22485600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr4:22482400-22486600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr4:22482800-22486200	Weak transcription	Ovary	ovary
31	chr4:22483000-22487400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr4:22483000-22488400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:22483400-22488200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:22483800-22484600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr4:22483800-22486400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr4:22484000-22484800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr4:22484000-22485000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr4:22484000-22485000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:22484000-22485000	Enhancers	Left Ventricle	heart
40	chr4:22484000-22485600	Enhancers	Fetal Heart	heart
41	chr4:22484000-22486400	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr4:22484000-22488400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:22484000-22488600	Enhancers	Primary hematopoietic stem cells	blood
44	chr4:22484200-22485000	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr4:22484200-22485400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr4:22484200-22485600	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr4:22484200-22485600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr4:22484200-22485600	Enhancers	Liver	Liver
49	chr4:22484200-22485600	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr4:22484200-22485800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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