Variant report

Variant	rs73123536
Chromosome Location	chr4:22631961-22631962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10004678	1.00[EUR][1000 genomes]
rs10013414	1.00[EUR][1000 genomes]
rs10019604	1.00[EUR][1000 genomes]
rs11944057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28414141	1.00[EUR][1000 genomes]
rs28426972	1.00[EUR][1000 genomes]
rs28591328	1.00[EUR][1000 genomes]
rs28698249	1.00[EUR][1000 genomes]
rs28775576	1.00[EUR][1000 genomes]
rs28798753	1.00[EUR][1000 genomes]
rs34198330	1.00[EUR][1000 genomes]
rs56344126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59046669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59538021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6831214	1.00[EUR][1000 genomes]
rs6836362	1.00[EUR][1000 genomes]
rs73123531	1.00[EUR][1000 genomes]
rs73123532	1.00[EUR][1000 genomes]
rs9992606	1.00[EUR][1000 genomes]
rs9995752	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1007053	chr4:22573534-22658117	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22631600-22632000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:22631600-22632600	Enhancers	Brain Germinal Matrix	brain
3	chr4:22631800-22632000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:22631800-22632000	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
5	chr4:22631800-22632200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:22631800-22632400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:22631800-22633000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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