Variant report

Variant	rs6831214
Chromosome Location	chr4:22684192-22684193
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11944057	1.00[EUR][1000 genomes]
rs12500024	0.82[AFR][1000 genomes]
rs12512285	0.81[AFR][1000 genomes]
rs28426972	1.00[EUR][1000 genomes]
rs28591328	1.00[EUR][1000 genomes]
rs28798753	1.00[EUR][1000 genomes]
rs34198330	1.00[EUR][1000 genomes]
rs3912484	1.00[GIH][hapmap]
rs4697335	1.00[GIH][hapmap]
rs4697341	1.00[GIH][hapmap]
rs56344126	1.00[EUR][1000 genomes]
rs59046669	1.00[EUR][1000 genomes]
rs59538021	1.00[EUR][1000 genomes]
rs73123531	1.00[EUR][1000 genomes]
rs73123532	1.00[EUR][1000 genomes]
rs73123536	1.00[EUR][1000 genomes]
rs73801147	0.82[AFR][1000 genomes]
rs73801148	0.82[AFR][1000 genomes]
rs73801150	0.82[AFR][1000 genomes]
rs73801151	0.82[AFR][1000 genomes]
rs7679304	0.82[AFR][1000 genomes]
rs9992606	1.00[EUR][1000 genomes]
rs9995752	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22678600-22687000	Weak transcription	Thymus	Thymus
2	chr4:22678800-22687200	Weak transcription	Fetal Thymus	thymus
3	chr4:22682000-22684600	Weak transcription	Fetal Intestine Large	intestine
4	chr4:22682200-22684800	Weak transcription	Fetal Intestine Small	intestine
5	chr4:22682200-22686600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:22682200-22687000	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:22682200-22687200	Weak transcription	HSMM	muscle
8	chr4:22682200-22694600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:22682400-22692200	Weak transcription	Liver	Liver
10	chr4:22682600-22689400	Weak transcription	Primary T cells from cord blood	blood
11	chr4:22682600-22691000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:22682800-22686800	Weak transcription	HSMMtube	muscle
13	chr4:22683200-22684200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:22683800-22684200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr4:22684000-22684200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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