Variant report

Variant	rs56344126
Chromosome Location	chr4:22679656-22679657
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11944057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28426972	1.00[EUR][1000 genomes]
rs28591328	1.00[EUR][1000 genomes]
rs28798753	1.00[EUR][1000 genomes]
rs34198330	1.00[EUR][1000 genomes]
rs59046669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59538021	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6831214	1.00[EUR][1000 genomes]
rs73123531	1.00[EUR][1000 genomes]
rs73123532	1.00[EUR][1000 genomes]
rs73123536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9992606	1.00[EUR][1000 genomes]
rs9995752	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22670600-22681800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:22677200-22681000	Weak transcription	Fetal Lung	lung
3	chr4:22677200-22682200	Enhancers	Colon Smooth Muscle	Colon
4	chr4:22678400-22681000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:22678600-22680000	Weak transcription	Fetal Intestine Large	intestine
6	chr4:22678600-22681600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:22678600-22681800	Weak transcription	Primary B cells from cord blood	blood
8	chr4:22678600-22687000	Weak transcription	Thymus	Thymus
9	chr4:22678800-22680800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr4:22678800-22680800	Weak transcription	Fetal Intestine Small	intestine
11	chr4:22678800-22687200	Weak transcription	Fetal Thymus	thymus
12	chr4:22679000-22681000	Weak transcription	Primary T cells from cord blood	blood
13	chr4:22679200-22679800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr4:22679400-22682000	Enhancers	Rectal Smooth Muscle	rectum
15	chr4:22679400-22682200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr4:22679600-22679800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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