Variant report
| Variant | rs11944057 |
|---|---|
| Chromosome Location | chr4:22647824-22647825 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:22642022..22643894-chr4:22646674..22649581,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10004678 | 1.00[EUR][1000 genomes] |
| rs10013414 | 1.00[EUR][1000 genomes] |
| rs10019604 | 1.00[EUR][1000 genomes] |
| rs28414141 | 1.00[EUR][1000 genomes] |
| rs28426972 | 1.00[EUR][1000 genomes] |
| rs28591328 | 1.00[EUR][1000 genomes] |
| rs28775576 | 1.00[EUR][1000 genomes] |
| rs28798753 | 1.00[EUR][1000 genomes] |
| rs34198330 | 1.00[EUR][1000 genomes] |
| rs56344126 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59046669 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59538021 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6831214 | 1.00[EUR][1000 genomes] |
| rs6836362 | 1.00[EUR][1000 genomes] |
| rs73123531 | 1.00[EUR][1000 genomes] |
| rs73123532 | 1.00[EUR][1000 genomes] |
| rs73123536 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9992606 | 1.00[EUR][1000 genomes] |
| rs9995752 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349061 | chr4:22379581-22887563 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv821634 | chr4:22427074-22865948 | Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1007053 | chr4:22573534-22658117 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:22646000-22648800 | Enhancers | Liver | Liver |
