Variant report

Variant	rs6837498
Chromosome Location	chr4:166356736-166356737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10000363	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10222903	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17687125	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28846814	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6836074	0.91[CEU][hapmap];0.93[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.83[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6841638	0.91[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73007499	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7664597	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9968549	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:166326800-166364400	Weak transcription	Brain Germinal Matrix	brain
3	chr4:166340000-166358800	Weak transcription	Fetal Brain Female	brain
4	chr4:166342800-166360000	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:166342800-166364000	Weak transcription	HepG2	liver
6	chr4:166343000-166358200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:166347400-166360800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:166348400-166361800	Weak transcription	Aorta	Aorta
9	chr4:166350400-166359400	Weak transcription	Brain Anterior Caudate	brain
10	chr4:166351000-166359400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:166352600-166361000	Weak transcription	Brain Angular Gyrus	brain
12	chr4:166352600-166366400	Weak transcription	Pancreas	Pancrea
13	chr4:166353200-166359200	Weak transcription	Fetal Brain Male	brain
14	chr4:166353400-166360800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:166355800-166360600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr4:166356400-166360800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:166356600-166361200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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