Variant report

Variant	rs6837541
Chromosome Location	chr4:78329827-78329828
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17002614	0.95[AFR][1000 genomes]
rs17002698	1.00[AMR][1000 genomes]
rs2099872	1.00[AMR][1000 genomes]
rs28715173	0.86[AFR][1000 genomes]
rs4643843	0.86[AFR][1000 genomes]
rs58763343	0.86[AFR][1000 genomes]
rs61169633	1.00[AMR][1000 genomes]
rs61199593	1.00[AMR][1000 genomes]
rs61389038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6850445	0.85[AFR][1000 genomes]
rs72859810	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72872063	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7672906	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9307270	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv594698	chr4:78291876-78334483	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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