Variant report

Variant	rs6840914
Chromosome Location	chr4:28681385-28681386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10021733	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10805278	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12648642	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1389178	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1514129	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1565703	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2047031	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2248575	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2458619	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2458621	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2458630	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2471685	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2471687	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2471688	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2471689	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2471690	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2471691	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2471692	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2471703	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2471705	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2471711	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28406281	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2943160	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4234996	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4234997	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4280716	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4367162	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4377578	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4382025	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4472125	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4605640	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4692335	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4692340	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4692341	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4692343	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs702	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7655105	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7672198	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7695696	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9790669	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757926	chr4:28543958-28839437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759239	chr4:28543958-28839437	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829894	chr4:28587323-28740840	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1848641	chr4:28588964-28760835	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv878782	chr4:28624265-28706757	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv34764	chr4:28632207-28722831	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2757050	chr4:28632207-28769118	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv433218	chr4:28641062-28732481	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv441865	chr4:28642333-28730824	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv34271	chr4:28642726-28754977	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv878783	chr4:28680520-28843029	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
12	nsv878784	chr4:28680520-29069894	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28678800-28682000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:28680000-28681600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:28680000-28682600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:28680400-28681800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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