Variant report

Variant	rs2047031
Chromosome Location	chr4:28680520-28680521
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10021733	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027922	0.91[ASN][1000 genomes]
rs10805278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501893	0.91[ASN][1000 genomes]
rs12505899	0.91[ASN][1000 genomes]
rs12641531	1.00[ASN][1000 genomes]
rs12648642	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1303817	0.82[ASN][1000 genomes]
rs1303818	0.82[ASN][1000 genomes]
rs1303819	0.82[ASN][1000 genomes]
rs13123915	0.82[ASN][1000 genomes]
rs13125329	0.82[ASN][1000 genomes]
rs13147296	0.82[ASN][1000 genomes]
rs1389178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1493150	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1514126	0.91[ASN][1000 genomes]
rs1514128	0.91[ASN][1000 genomes]
rs1514129	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs167104	0.91[ASN][1000 genomes]
rs2221775	0.82[ASN][1000 genomes]
rs2248575	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458606	0.91[ASN][1000 genomes]
rs2458607	0.91[ASN][1000 genomes]
rs2458608	0.91[ASN][1000 genomes]
rs2458613	0.91[ASN][1000 genomes]
rs2458614	0.91[ASN][1000 genomes]
rs2458616	0.91[ASN][1000 genomes]
rs2458617	0.91[ASN][1000 genomes]
rs2458618	0.91[ASN][1000 genomes]
rs2458619	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458621	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2458624	0.91[ASN][1000 genomes]
rs2458626	1.00[ASN][1000 genomes]
rs2458627	1.00[ASN][1000 genomes]
rs2458628	1.00[ASN][1000 genomes]
rs2458629	0.92[ASN][1000 genomes]
rs2458630	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2471685	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2471687	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2471688	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2471689	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2471690	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2471691	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2471692	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2471703	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2471705	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2471707	1.00[ASN][1000 genomes]
rs2471709	1.00[ASN][1000 genomes]
rs2471710	1.00[ASN][1000 genomes]
rs2471711	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2471715	0.91[ASN][1000 genomes]
rs2471717	0.91[ASN][1000 genomes]
rs2471718	0.91[ASN][1000 genomes]
rs2471719	0.91[ASN][1000 genomes]
rs2471720	0.91[ASN][1000 genomes]
rs2471721	0.91[ASN][1000 genomes]
rs28406281	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28645352	0.82[ASN][1000 genomes]
rs292014	0.82[ASN][1000 genomes]
rs292049	0.82[ASN][1000 genomes]
rs292055	0.82[ASN][1000 genomes]
rs292057	0.82[ASN][1000 genomes]
rs292060	0.82[ASN][1000 genomes]
rs292072	0.82[ASN][1000 genomes]
rs292076	0.82[ASN][1000 genomes]
rs292078	0.82[ASN][1000 genomes]
rs292079	0.82[ASN][1000 genomes]
rs292082	0.82[ASN][1000 genomes]
rs292084	0.82[ASN][1000 genomes]
rs292085	0.82[ASN][1000 genomes]
rs2943155	0.91[ASN][1000 genomes]
rs2943156	0.91[ASN][1000 genomes]
rs2943157	0.91[ASN][1000 genomes]
rs2943158	0.91[ASN][1000 genomes]
rs2943160	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960592	0.91[ASN][1000 genomes]
rs2995111	0.91[ASN][1000 genomes]
rs4234996	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234997	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4280716	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4367162	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4377578	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4382025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4472125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4605640	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692334	1.00[ASN][1000 genomes]
rs4692335	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692340	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs542264	0.82[ASN][1000 genomes]
rs557255	0.91[ASN][1000 genomes]
rs611376	0.82[ASN][1000 genomes]
rs673272	0.82[ASN][1000 genomes]
rs6840914	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs687535	0.82[ASN][1000 genomes]
rs702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655105	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7672198	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695696	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698467	1.00[ASN][1000 genomes]
rs9784504	1.00[ASN][1000 genomes]
rs9790669	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757926	chr4:28543958-28839437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759239	chr4:28543958-28839437	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878781	chr4:28568780-28680520	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv829894	chr4:28587323-28740840	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1848641	chr4:28588964-28760835	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv878782	chr4:28624265-28706757	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv34764	chr4:28632207-28722831	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2757050	chr4:28632207-28769118	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv433218	chr4:28641062-28732481	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv441865	chr4:28642333-28730824	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv34271	chr4:28642726-28754977	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv878783	chr4:28680520-28843029	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
13	nsv878784	chr4:28680520-29069894	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28678800-28682000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:28680000-28681600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:28680000-28682600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:28680400-28681800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links