Variant report

Variant	rs6848916
Chromosome Location	chr4:152673933-152673934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:152670873..152674277-chr4:152679568..152685187,6	K562	blood:
2	chr4:152673664..152676515-chr4:152686952..152689001,2	K562	blood:
3	chr4:152671565..152674300-chr4:152679568..152682884,5	K562	blood:

Variant related genes	Relation type
ENSG00000059691	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17028060	1.00[AMR][1000 genomes]
rs6822732	1.00[AMR][1000 genomes]
rs6849782	1.00[AFR][1000 genomes]
rs7656154	1.00[AMR][1000 genomes]
rs7677548	1.00[AMR][1000 genomes]
rs7699059	1.00[AMR][1000 genomes]
rs7699537	1.00[AMR][1000 genomes]
rs7699639	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508322	chr4:152617079-152678951	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152629200-152681400	Weak transcription	Colonic Mucosa	Colon
2	chr4:152629400-152681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:152651800-152681400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:152657800-152674000	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:152657800-152677600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:152658400-152674200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:152658600-152674000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr4:152658600-152681200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:152659000-152674000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:152659000-152681400	Weak transcription	Pancreas	Pancrea
11	chr4:152659200-152674200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:152659200-152674400	Weak transcription	Right Ventricle	heart
13	chr4:152659400-152674000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:152659400-152674200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:152659400-152674600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr4:152659400-152675200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr4:152659400-152675400	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:152659400-152677200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:152659400-152678400	Weak transcription	Fetal Stomach	stomach
20	chr4:152659400-152681400	Weak transcription	Thymus	Thymus
21	chr4:152659600-152674200	Weak transcription	Aorta	Aorta
22	chr4:152659600-152674800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr4:152659600-152681200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:152659800-152681400	Weak transcription	Spleen	Spleen
25	chr4:152660000-152674200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr4:152660200-152674200	Weak transcription	Esophagus	oesophagus
27	chr4:152660800-152674200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr4:152660800-152675000	Weak transcription	Left Ventricle	heart
29	chr4:152660800-152681000	Weak transcription	Fetal Lung	lung
30	chr4:152661600-152674200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr4:152661600-152674800	Weak transcription	Dnd41	blood
32	chr4:152662600-152681400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr4:152663000-152674400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr4:152665000-152677200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr4:152665400-152681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr4:152666200-152674000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:152666200-152681200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr4:152666400-152681000	Weak transcription	HUVEC	blood vessel
39	chr4:152666400-152681200	Weak transcription	Hela-S3	cervix
40	chr4:152666600-152674200	Weak transcription	Osteobl	bone
41	chr4:152666600-152681200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:152666800-152681200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr4:152667000-152681200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr4:152667200-152674000	Weak transcription	Fetal Intestine Large	intestine
45	chr4:152667200-152674600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr4:152667200-152681000	Weak transcription	GM12878-XiMat	blood
47	chr4:152667400-152674200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr4:152667400-152674200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr4:152667400-152674200	Weak transcription	Gastric	stomach
50	chr4:152667400-152677000	Weak transcription	Brain Substantia Nigra	brain

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