Variant report

Variant	rs7699059
Chromosome Location	chr4:152641586-152641587
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152639673..152642588-chr4:152644678..152647356,2	K562	blood:

Variant related genes	Relation type
ENSG00000059691	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17028060	1.00[AMR][1000 genomes]
rs6822732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6848916	1.00[AMR][1000 genomes]
rs7656154	1.00[AMR][1000 genomes]
rs7677548	1.00[AMR][1000 genomes]
rs7678484	1.00[AFR][1000 genomes]
rs7699537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7699639	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508322	chr4:152617079-152678951	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152591200-152646800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:152598400-152648200	Weak transcription	HMEC	breast
3	chr4:152609800-152646200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:152612000-152651000	Weak transcription	K562	blood
5	chr4:152612400-152642600	Weak transcription	NHLF	lung
6	chr4:152614600-152651200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:152615000-152651000	Weak transcription	HSMM	muscle
8	chr4:152616600-152665400	Weak transcription	NHDF-Ad	bronchial
9	chr4:152621400-152651600	Weak transcription	Small Intestine	intestine
10	chr4:152622000-152644600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:152623000-152646200	Weak transcription	Fetal Lung	lung
12	chr4:152623200-152648200	Weak transcription	NHEK	skin
13	chr4:152623800-152642600	Weak transcription	Fetal Kidney	kidney
14	chr4:152624000-152645600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:152624000-152646400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:152625000-152651000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:152625200-152642400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:152629000-152658800	Weak transcription	Pancreas	Pancrea
19	chr4:152629200-152642600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:152629200-152657400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr4:152629200-152681400	Weak transcription	Colonic Mucosa	Colon
22	chr4:152629400-152645600	Weak transcription	Colon Smooth Muscle	Colon
23	chr4:152629400-152648200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:152629400-152651200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:152629400-152651200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr4:152629400-152681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:152629600-152648400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:152631200-152651200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:152633400-152657000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr4:152636200-152644400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr4:152636600-152644600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr4:152636600-152647200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr4:152636600-152651000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:152636600-152651000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr4:152637200-152641600	Strong transcription	Fetal Intestine Small	intestine
36	chr4:152638000-152648400	Weak transcription	Primary B cells from cord blood	blood
37	chr4:152638000-152651600	Weak transcription	Ovary	ovary
38	chr4:152638200-152646200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr4:152638200-152649600	Weak transcription	GM12878-XiMat	blood
40	chr4:152638200-152651600	Weak transcription	Fetal Intestine Large	intestine
41	chr4:152639000-152641600	Enhancers	Brain Substantia Nigra	brain
42	chr4:152639000-152642400	Weak transcription	Thymus	Thymus
43	chr4:152639200-152641600	Enhancers	Brain Cingulate Gyrus	brain
44	chr4:152640000-152643200	Enhancers	Fetal Heart	heart
45	chr4:152640000-152643400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr4:152640200-152648800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr4:152640400-152645800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr4:152640600-152642600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr4:152640600-152642600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:152640600-152644600	Weak transcription	Brain Anterior Caudate	brain

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