Variant report

Variant	rs7656154
Chromosome Location	chr4:152651079-152651080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:152642909..152646471-chr4:152647150..152651425,3	K562	blood:
2	chr4:152621775..152623780-chr4:152649637..152652464,2	MCF-7	breast:
3	chr4:152650161..152652116-chr4:152663866..152666742,2	K562	blood:
4	chr4:152650507..152652016-chr4:152681494..152683428,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000059691	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17028060	1.00[AMR][1000 genomes]
rs6822732	1.00[AMR][1000 genomes]
rs6848916	1.00[AMR][1000 genomes]
rs7677548	1.00[AMR][1000 genomes]
rs7699059	1.00[AMR][1000 genomes]
rs7699537	1.00[AMR][1000 genomes]
rs7699639	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508322	chr4:152617079-152678951	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152614600-152651200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr4:152616600-152665400	Weak transcription	NHDF-Ad	bronchial
3	chr4:152621400-152651600	Weak transcription	Small Intestine	intestine
4	chr4:152629000-152658800	Weak transcription	Pancreas	Pancrea
5	chr4:152629200-152657400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:152629200-152681400	Weak transcription	Colonic Mucosa	Colon
7	chr4:152629400-152651200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:152629400-152651200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:152629400-152681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:152631200-152651200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:152633400-152657000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:152638000-152651600	Weak transcription	Ovary	ovary
13	chr4:152638200-152651600	Weak transcription	Fetal Intestine Large	intestine
14	chr4:152640600-152658800	Weak transcription	Lung	lung
15	chr4:152640800-152651200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:152640800-152651400	Weak transcription	Gastric	stomach
17	chr4:152640800-152658800	Weak transcription	Right Atrium	heart
18	chr4:152641000-152657000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:152641000-152657000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:152641000-152657400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:152641200-152657600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr4:152641400-152651200	Weak transcription	Stomach Mucosa	stomach
23	chr4:152641400-152651400	Weak transcription	HSMMtube	muscle
24	chr4:152641400-152657000	Weak transcription	Aorta	Aorta
25	chr4:152641400-152657000	Weak transcription	Liver	Liver
26	chr4:152643000-152651400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:152643200-152657000	Weak transcription	Fetal Intestine Small	intestine
28	chr4:152644400-152657000	Weak transcription	Primary T cells from cord blood	blood
29	chr4:152644600-152666600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr4:152645000-152657400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr4:152646600-152651200	Weak transcription	Left Ventricle	heart
32	chr4:152646600-152657000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr4:152648200-152651400	Enhancers	NHEK	skin
34	chr4:152648200-152652000	Enhancers	HMEC	breast
35	chr4:152649000-152657200	Weak transcription	Primary B cells from cord blood	blood
36	chr4:152649400-152651200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:152650000-152651600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:152650200-152652200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr4:152650600-152652000	Enhancers	Hela-S3	cervix
40	chr4:152650800-152651600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:152651000-152651200	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr4:152651000-152651600	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr4:152651000-152651800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:152651000-152651800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr4:152651000-152651800	Enhancers	HSMM	muscle
46	chr4:152651000-152652000	Enhancers	Placenta Amnion	Placenta Amnion
47	chr4:152651000-152652000	Enhancers	Right Ventricle	heart
48	chr4:152651000-152652000	Enhancers	K562	blood
49	chr4:152651000-152652200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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