Variant report

Variant	rs6851962
Chromosome Location	chr4:125856050-125856051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:125825931..125828528-chr4:125854551..125857392,2	MCF-7	breast:
2	chr4:125632485..125635693-chr4:125853926..125858479,5	MCF-7	breast:
3	chr4:125633372..125635568-chr4:125854459..125856235,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10006172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931654	0.83[ASN][1000 genomes]
rs11932360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11936463	0.83[ASN][1000 genomes]
rs11936464	0.83[ASN][1000 genomes]
rs11940990	0.91[ASN][1000 genomes]
rs11941253	0.91[ASN][1000 genomes]
rs13108189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498043	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17008833	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17008868	0.83[ASN][1000 genomes]
rs28559639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35283842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35370493	0.83[ASN][1000 genomes]
rs35420046	0.83[ASN][1000 genomes]
rs56107106	0.83[ASN][1000 genomes]
rs59008121	0.83[ASN][1000 genomes]
rs6841865	0.83[ASN][1000 genomes]
rs6846803	0.81[ASN][1000 genomes]
rs6847185	0.83[ASN][1000 genomes]
rs6847509	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6851942	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6852823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853549	0.91[ASN][1000 genomes]
rs9993806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125844800-125860600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125845600-125857600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:125851600-125856200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:125852400-125857200	Weak transcription	HSMMtube	muscle
5	chr4:125852600-125856200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:125852800-125857800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:125853000-125857400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:125853000-125857400	Weak transcription	Osteobl	bone
9	chr4:125853200-125856200	Weak transcription	Hela-S3	cervix
10	chr4:125853200-125859000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:125854200-125857600	Weak transcription	Pancreas	Pancrea
12	chr4:125854600-125856200	Enhancers	Fetal Heart	heart
13	chr4:125855200-125858000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:125855600-125858000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:125855600-125858200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:125855800-125856200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:125856000-125856400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr4:125856000-125856600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr4:125856000-125856600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:125856000-125856800	Enhancers	HUES48 Cell Line	embryonic stem cell

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