Variant report

Variant	rs11941253
Chromosome Location	chr4:125855983-125855984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:125825931..125828528-chr4:125854551..125857392,2	MCF-7	breast:
2	chr4:125632485..125635693-chr4:125853926..125858479,5	MCF-7	breast:
3	chr4:125633372..125635568-chr4:125854459..125856235,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10006172	0.91[ASN][1000 genomes]
rs11931077	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11931654	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11932360	0.91[ASN][1000 genomes]
rs11936463	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11936464	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11940990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13102212	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13108189	0.91[ASN][1000 genomes]
rs13108522	0.91[ASN][1000 genomes]
rs13129944	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13149362	0.83[EUR][1000 genomes]
rs13151922	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1498044	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17008772	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17008804	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17008868	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1817524	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1848055	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1911130	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2390767	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28559639	0.91[ASN][1000 genomes]
rs35283842	0.91[ASN][1000 genomes]
rs35370493	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35420046	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35500952	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56107106	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59008121	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67619349	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6834370	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6841865	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6846803	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6847185	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6847509	0.82[ASN][1000 genomes]
rs6851962	0.91[ASN][1000 genomes]
rs6852823	0.91[ASN][1000 genomes]
rs6853549	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610104	0.83[EUR][1000 genomes]
rs71610105	0.83[EUR][1000 genomes]
rs9637631	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9993806	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125844800-125860600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125845600-125857600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:125851600-125856200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:125852400-125857200	Weak transcription	HSMMtube	muscle
5	chr4:125852600-125856200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:125852800-125857800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:125853000-125857400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:125853000-125857400	Weak transcription	Osteobl	bone
9	chr4:125853200-125856000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:125853200-125856000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:125853200-125856000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:125853200-125856200	Weak transcription	Hela-S3	cervix
13	chr4:125853200-125859000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:125854200-125857600	Weak transcription	Pancreas	Pancrea
15	chr4:125854600-125856200	Enhancers	Fetal Heart	heart
16	chr4:125855200-125858000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:125855600-125858000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:125855600-125858200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:125855800-125856200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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