Variant report

Variant	rs1911130
Chromosome Location	chr4:125828384-125828385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125825931..125828528-chr4:125854551..125857392,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11931077	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11931654	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11936463	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11936464	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11940990	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11941253	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13102212	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13129944	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13137556	0.81[EUR][1000 genomes]
rs13149362	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13151922	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498043	0.90[ASN][1000 genomes]
rs1498044	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008772	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008804	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008833	0.90[ASN][1000 genomes]
rs17008868	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1817524	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848055	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2390767	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35370493	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35420046	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35500952	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56107106	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59008121	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67619349	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834370	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841865	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6846803	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6847185	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6847509	0.85[ASN][1000 genomes]
rs6851942	0.90[ASN][1000 genomes]
rs6853549	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71610104	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71610105	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9637631	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv470069	chr4:125807868-125850998	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv879887	chr4:125816783-125847530	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879888	chr4:125816783-125850022	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv879889	chr4:125816783-125853748	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv524519	chr4:125826626-125842087	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125824200-125833400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:125825400-125829600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:125825800-125829000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:125825800-125829000	Weak transcription	Osteobl	bone
5	chr4:125825800-125829400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:125826200-125829000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:125826400-125834800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:125827600-125831600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links