Variant report

Variant	rs13137556
Chromosome Location	chr4:125771196-125771197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125632635..125634517-chr4:125770420..125772413,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10031582	0.86[ASN][1000 genomes]
rs10518453	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1112007	0.95[ASN][1000 genomes]
rs1156517	0.87[ASN][1000 genomes]
rs11931077	0.82[EUR][1000 genomes]
rs11931654	0.82[EUR][1000 genomes]
rs11936463	0.82[EUR][1000 genomes]
rs11943658	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13101993	0.84[ASN][1000 genomes]
rs13102212	0.82[EUR][1000 genomes]
rs13109378	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13111027	0.91[ASN][1000 genomes]
rs13113484	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13119552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124562	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs13129944	0.82[EUR][1000 genomes]
rs13133825	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13149362	0.85[EUR][1000 genomes]
rs13151922	0.82[EUR][1000 genomes]
rs1395330	0.95[ASN][1000 genomes]
rs1498044	0.82[EUR][1000 genomes]
rs17008674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008677	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17008772	0.83[EUR][1000 genomes]
rs17008804	0.82[EUR][1000 genomes]
rs17008868	0.82[EUR][1000 genomes]
rs1817524	0.82[EUR][1000 genomes]
rs1848055	0.83[EUR][1000 genomes]
rs1911130	0.81[EUR][1000 genomes]
rs2036203	0.84[ASN][1000 genomes]
rs2055273	0.87[ASN][1000 genomes]
rs2390767	0.82[EUR][1000 genomes]
rs28427235	0.87[ASN][1000 genomes]
rs313997	0.87[ASN][1000 genomes]
rs34078885	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34813358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35370493	0.82[EUR][1000 genomes]
rs35420046	0.82[EUR][1000 genomes]
rs35452496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35500952	0.83[EUR][1000 genomes]
rs35728397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36040717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834006	0.93[ASN][1000 genomes]
rs55741225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56107106	0.82[EUR][1000 genomes]
rs56138521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57205016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58445385	0.86[ASN][1000 genomes]
rs58661679	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59008121	0.82[EUR][1000 genomes]
rs61231754	0.91[ASN][1000 genomes]
rs66521462	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs67619349	0.82[EUR][1000 genomes]
rs6830179	0.87[ASN][1000 genomes]
rs6834370	0.83[EUR][1000 genomes]
rs6840646	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6841569	0.84[ASN][1000 genomes]
rs6841865	0.82[EUR][1000 genomes]
rs6846803	0.82[EUR][1000 genomes]
rs6847185	0.82[EUR][1000 genomes]
rs71610103	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs71610104	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71610105	0.85[EUR][1000 genomes]
rs72916676	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73848114	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7672230	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125768000-125773000	Weak transcription	Placenta Amnion	Placenta Amnion

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