Variant report

Variant	rs71610104
Chromosome Location	chr4:125798343-125798344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11931077	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11931654	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11936463	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11936464	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11940990	0.83[EUR][1000 genomes]
rs11941253	0.83[EUR][1000 genomes]
rs13102212	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13119552	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13124340	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13129944	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13137556	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13148187	0.81[EUR][1000 genomes]
rs13149362	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13151922	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1498043	0.81[ASN][1000 genomes]
rs1498044	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17008674	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17008772	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17008804	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17008833	0.81[ASN][1000 genomes]
rs17008868	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1817524	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1848055	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1911130	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2390767	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34813358	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35370493	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35420046	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35452496	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35500952	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35728397	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36040717	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55741225	0.80[AMR][1000 genomes]
rs56107106	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56138521	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57205016	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59008121	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67619349	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6834370	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6841865	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6846803	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6847185	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6851942	0.81[ASN][1000 genomes]
rs6853549	0.84[EUR][1000 genomes]
rs71610105	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9637631	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125797600-125798400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr4:125797800-125798400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr4:125797800-125798400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr4:125797800-125798400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:125797800-125798600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:125798200-125798400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:125798200-125820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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