Variant report

Variant	rs36040717
Chromosome Location	chr4:125764968-125764969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125764608..125767385-chr4:125861503..125863790,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10031582	0.86[ASN][1000 genomes]
rs10518453	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1112007	0.95[ASN][1000 genomes]
rs1156517	0.87[ASN][1000 genomes]
rs11943658	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13101993	0.84[ASN][1000 genomes]
rs13109378	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13111027	0.91[ASN][1000 genomes]
rs13113484	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13119552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124562	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs13133825	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13137556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13149362	0.83[EUR][1000 genomes]
rs1395330	0.95[ASN][1000 genomes]
rs17008674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008677	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17008772	0.81[EUR][1000 genomes]
rs1848055	0.81[EUR][1000 genomes]
rs2036203	0.84[ASN][1000 genomes]
rs2055273	0.87[ASN][1000 genomes]
rs28427235	0.87[ASN][1000 genomes]
rs313997	0.87[ASN][1000 genomes]
rs34078885	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34813358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35452496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35500952	0.81[EUR][1000 genomes]
rs35728397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834006	0.93[ASN][1000 genomes]
rs55741225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56138521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57205016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58445385	0.86[ASN][1000 genomes]
rs58661679	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61231754	0.91[ASN][1000 genomes]
rs66521462	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6830179	0.87[ASN][1000 genomes]
rs6834370	0.81[EUR][1000 genomes]
rs6840646	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6841569	0.84[ASN][1000 genomes]
rs71610103	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs71610104	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71610105	0.83[EUR][1000 genomes]
rs72916676	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73848114	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7672230	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879883	chr4:125732734-125767985	Enhancers ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125763600-125765400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:125763600-125767400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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