Variant report

Variant	rs13133825
Chromosome Location	chr4:125758559-125758560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10031582	0.86[ASN][1000 genomes]
rs10518443	0.90[EUR][1000 genomes]
rs10518453	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1112007	0.88[ASN][1000 genomes]
rs1156517	0.95[ASN][1000 genomes]
rs11943658	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13109378	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13111027	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13113484	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13119552	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13124340	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13124562	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs13134434	0.88[EUR][1000 genomes]
rs13137556	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13141870	0.90[EUR][1000 genomes]
rs13146997	0.90[EUR][1000 genomes]
rs1395330	0.88[ASN][1000 genomes]
rs17008674	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17008677	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2036203	0.84[ASN][1000 genomes]
rs2055273	0.87[ASN][1000 genomes]
rs28427235	0.87[ASN][1000 genomes]
rs313997	0.87[ASN][1000 genomes]
rs34078885	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34614769	0.90[EUR][1000 genomes]
rs34813358	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35452496	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35728397	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs36040717	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4834006	0.86[ASN][1000 genomes]
rs55741225	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56138521	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57205016	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58445385	0.83[ASN][1000 genomes]
rs58661679	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61231754	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66521462	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6827142	0.90[EUR][1000 genomes]
rs6830179	0.87[ASN][1000 genomes]
rs6840646	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6841569	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71610103	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72916638	0.90[EUR][1000 genomes]
rs72916676	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73848114	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7672230	0.93[ASN][1000 genomes]
rs7677014	0.90[EUR][1000 genomes]
rs7677514	0.90[EUR][1000 genomes]
rs963914	0.90[EUR][1000 genomes]
rs963915	0.90[EUR][1000 genomes]
rs963916	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879883	chr4:125732734-125767985	Enhancers ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125724600-125759600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125755200-125763000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:125755600-125760800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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