Variant report

Variant	rs34614769
Chromosome Location	chr4:125732384-125732385
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10518443	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11943658	0.85[EUR][1000 genomes]
rs13102814	0.82[EUR][1000 genomes]
rs13109378	0.97[EUR][1000 genomes]
rs13111027	0.97[EUR][1000 genomes]
rs13113484	0.95[EUR][1000 genomes]
rs13133825	0.90[EUR][1000 genomes]
rs13134434	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146997	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34078885	0.95[EUR][1000 genomes]
rs58661679	0.97[EUR][1000 genomes]
rs61231754	0.97[EUR][1000 genomes]
rs66521462	0.97[EUR][1000 genomes]
rs6827142	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840646	0.97[EUR][1000 genomes]
rs6841569	0.97[EUR][1000 genomes]
rs71610103	0.91[EUR][1000 genomes]
rs72916638	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916676	0.91[EUR][1000 genomes]
rs73848114	0.97[EUR][1000 genomes]
rs7677014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677514	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963914	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963915	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963916	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125724600-125759600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125731200-125733000	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:125731400-125732400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:125731600-125732600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:125731600-125732600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:125731600-125733400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:125731800-125732800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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