Variant report

Variant	rs6840646
Chromosome Location	chr4:125731358-125731359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10031582	0.89[ASN][1000 genomes]
rs10518443	0.97[EUR][1000 genomes]
rs10518453	0.91[ASN][1000 genomes]
rs1112007	0.91[ASN][1000 genomes]
rs1156517	0.91[ASN][1000 genomes]
rs11943658	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13101993	0.81[ASN][1000 genomes]
rs13102814	0.85[EUR][1000 genomes]
rs13109378	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111027	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13113484	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13119552	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13124340	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13124562	0.91[ASN][1000 genomes]
rs13133825	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13134434	0.95[EUR][1000 genomes]
rs13137556	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13141870	0.97[EUR][1000 genomes]
rs13146997	0.97[EUR][1000 genomes]
rs1395330	0.91[ASN][1000 genomes]
rs17008674	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17008677	0.91[ASN][1000 genomes]
rs2036203	0.88[ASN][1000 genomes]
rs2055273	0.91[ASN][1000 genomes]
rs28427235	0.91[ASN][1000 genomes]
rs313997	0.91[ASN][1000 genomes]
rs34078885	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34614769	0.97[EUR][1000 genomes]
rs34813358	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35452496	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35728397	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs36040717	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4834006	0.89[ASN][1000 genomes]
rs55741225	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56138521	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57205016	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58445385	0.86[ASN][1000 genomes]
rs58661679	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61231754	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66521462	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827142	0.97[EUR][1000 genomes]
rs6830179	0.91[ASN][1000 genomes]
rs6841569	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71610103	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916638	0.97[EUR][1000 genomes]
rs72916676	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73848114	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7672230	0.96[ASN][1000 genomes]
rs7677014	0.97[EUR][1000 genomes]
rs7677514	0.97[EUR][1000 genomes]
rs963914	0.97[EUR][1000 genomes]
rs963915	0.97[EUR][1000 genomes]
rs963916	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125724600-125759600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125726600-125731400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:125729000-125731600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:125729200-125731800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:125729400-125731400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:125729400-125731600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:125729600-125731800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:125730800-125731600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:125731200-125733000	Enhancers	Rectal Smooth Muscle	rectum

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