Variant report

Variant	rs1156517
Chromosome Location	chr4:125734423-125734424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10031582	0.81[ASN][1000 genomes]
rs10518453	0.82[ASN][1000 genomes]
rs1112007	0.82[ASN][1000 genomes]
rs11943658	0.91[ASN][1000 genomes]
rs13109378	0.91[ASN][1000 genomes]
rs13111027	0.85[ASN][1000 genomes]
rs13113484	0.91[ASN][1000 genomes]
rs13119552	0.87[ASN][1000 genomes]
rs13124340	0.87[ASN][1000 genomes]
rs13124562	0.82[ASN][1000 genomes]
rs13133825	0.95[ASN][1000 genomes]
rs13137556	0.87[ASN][1000 genomes]
rs1395330	0.82[ASN][1000 genomes]
rs17008674	0.87[ASN][1000 genomes]
rs17008677	0.82[ASN][1000 genomes]
rs2055273	0.82[ASN][1000 genomes]
rs28427235	0.82[ASN][1000 genomes]
rs313997	0.82[ASN][1000 genomes]
rs34078885	0.91[ASN][1000 genomes]
rs34813358	0.87[ASN][1000 genomes]
rs35452496	0.87[ASN][1000 genomes]
rs35728397	0.87[ASN][1000 genomes]
rs36040717	0.87[ASN][1000 genomes]
rs4834006	0.81[ASN][1000 genomes]
rs55741225	0.87[ASN][1000 genomes]
rs56138521	0.87[ASN][1000 genomes]
rs57205016	0.87[ASN][1000 genomes]
rs58661679	0.91[ASN][1000 genomes]
rs61231754	0.85[ASN][1000 genomes]
rs66521462	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6830179	0.82[ASN][1000 genomes]
rs6840646	0.91[ASN][1000 genomes]
rs71610103	0.91[ASN][1000 genomes]
rs72916676	0.91[ASN][1000 genomes]
rs73848114	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7672230	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879883	chr4:125732734-125767985	Enhancers ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125724600-125759600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125733800-125734600	Weak transcription	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links