Variant report

Variant	rs10031582
Chromosome Location	chr4:125677003-125677004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10518453	0.81[ASN][1000 genomes]
rs1112007	0.81[ASN][1000 genomes]
rs1156517	0.81[ASN][1000 genomes]
rs11722399	0.84[CEU][hapmap]
rs11943658	0.89[ASN][1000 genomes]
rs13109378	0.89[ASN][1000 genomes]
rs13111027	0.95[ASN][1000 genomes]
rs13113484	0.89[ASN][1000 genomes]
rs13119552	0.86[ASN][1000 genomes]
rs13124340	0.86[ASN][1000 genomes]
rs13124562	0.81[ASN][1000 genomes]
rs13133825	0.86[ASN][1000 genomes]
rs13137556	0.86[ASN][1000 genomes]
rs1395330	0.81[ASN][1000 genomes]
rs17008674	0.86[ASN][1000 genomes]
rs17008677	0.81[ASN][1000 genomes]
rs2036203	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2055273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28427235	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs313997	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34078885	0.89[ASN][1000 genomes]
rs34813358	0.86[ASN][1000 genomes]
rs35452496	0.86[ASN][1000 genomes]
rs35728397	0.86[ASN][1000 genomes]
rs36040717	0.86[ASN][1000 genomes]
rs4834006	0.83[ASN][1000 genomes]
rs55741225	0.86[ASN][1000 genomes]
rs56138521	0.86[ASN][1000 genomes]
rs57205016	0.86[ASN][1000 genomes]
rs58445385	0.86[ASN][1000 genomes]
rs58661679	0.89[ASN][1000 genomes]
rs61231754	0.95[ASN][1000 genomes]
rs66521462	0.89[ASN][1000 genomes]
rs6830179	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6840646	0.89[ASN][1000 genomes]
rs6841569	0.87[ASN][1000 genomes]
rs71610103	0.89[ASN][1000 genomes]
rs72916676	0.89[ASN][1000 genomes]
rs73848114	0.89[ASN][1000 genomes]
rs7672230	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879882	chr4:125662969-125703938	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10031582	ANKRD50	cis	Artery Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125676400-125678000	Weak transcription	NHDF-Ad	bronchial
2	chr4:125676400-125678600	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links