Variant report

Variant	rs2036203
Chromosome Location	chr4:125675055-125675056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125673858..125676669-chr4:125678451..125680331,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10031582	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11722399	0.84[CEU][hapmap]
rs11943658	0.88[ASN][1000 genomes]
rs13109378	0.88[ASN][1000 genomes]
rs13111027	0.93[ASN][1000 genomes]
rs13113484	0.88[ASN][1000 genomes]
rs13119552	0.84[ASN][1000 genomes]
rs13124340	0.84[ASN][1000 genomes]
rs13133825	0.84[ASN][1000 genomes]
rs13137556	0.84[ASN][1000 genomes]
rs17008674	0.84[ASN][1000 genomes]
rs2055273	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28427235	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs313997	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34078885	0.88[ASN][1000 genomes]
rs34813358	0.84[ASN][1000 genomes]
rs35452496	0.84[ASN][1000 genomes]
rs35728397	0.84[ASN][1000 genomes]
rs36040717	0.84[ASN][1000 genomes]
rs4834006	0.81[ASN][1000 genomes]
rs55741225	0.84[ASN][1000 genomes]
rs56138521	0.84[ASN][1000 genomes]
rs57205016	0.84[ASN][1000 genomes]
rs58445385	0.84[ASN][1000 genomes]
rs58661679	0.88[ASN][1000 genomes]
rs61231754	0.93[ASN][1000 genomes]
rs66521462	0.88[ASN][1000 genomes]
rs6830179	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6840646	0.88[ASN][1000 genomes]
rs6841569	0.80[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs71610103	0.88[ASN][1000 genomes]
rs72916676	0.88[ASN][1000 genomes]
rs73848114	0.88[ASN][1000 genomes]
rs7672230	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879882	chr4:125662969-125703938	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125674800-125676000	Enhancers	Liver	Liver
2	chr4:125675000-125676400	Enhancers	NHDF-Ad	bronchial
3	chr4:125675000-125676800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links