Variant report

Variant	rs6827142
Chromosome Location	chr4:125729191-125729192
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10518443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11943658	0.85[EUR][1000 genomes]
rs13102814	0.82[EUR][1000 genomes]
rs13109378	0.97[EUR][1000 genomes]
rs13111027	0.97[EUR][1000 genomes]
rs13113484	0.95[EUR][1000 genomes]
rs13133825	0.90[EUR][1000 genomes]
rs13134434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34078885	0.95[EUR][1000 genomes]
rs34614769	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58661679	0.97[EUR][1000 genomes]
rs61231754	0.97[EUR][1000 genomes]
rs66521462	0.97[EUR][1000 genomes]
rs6840646	0.97[EUR][1000 genomes]
rs6841569	0.97[EUR][1000 genomes]
rs71610103	0.91[EUR][1000 genomes]
rs72916638	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916676	0.91[EUR][1000 genomes]
rs73848114	0.97[EUR][1000 genomes]
rs7677014	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677514	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963914	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963915	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963916	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv15885	chr4:125727333-125730018	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125724600-125759600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125726600-125731400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:125726800-125731200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:125728200-125729400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:125728600-125729400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:125728800-125729200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:125729000-125729600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:125729000-125731600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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