Variant report

Variant	rs6851942
Chromosome Location	chr4:125832910-125832911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125831092..125833359-chr4:125835082..125836657,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10006172	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11931077	0.88[ASN][1000 genomes]
rs11931654	0.85[ASN][1000 genomes]
rs11932360	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11936463	0.85[ASN][1000 genomes]
rs11936464	0.85[ASN][1000 genomes]
rs13102212	0.90[ASN][1000 genomes]
rs13108189	0.93[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13108522	0.93[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13129944	0.90[ASN][1000 genomes]
rs13149362	0.81[ASN][1000 genomes]
rs13151922	0.90[ASN][1000 genomes]
rs1498043	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498044	0.90[ASN][1000 genomes]
rs17008772	0.90[ASN][1000 genomes]
rs17008804	0.90[ASN][1000 genomes]
rs17008833	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008868	0.85[ASN][1000 genomes]
rs1817524	0.90[ASN][1000 genomes]
rs1848055	0.90[ASN][1000 genomes]
rs1911130	0.90[ASN][1000 genomes]
rs2390767	0.88[ASN][1000 genomes]
rs28559639	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35283842	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35370493	0.85[ASN][1000 genomes]
rs35420046	0.85[ASN][1000 genomes]
rs35500952	0.88[ASN][1000 genomes]
rs56107106	0.85[ASN][1000 genomes]
rs59008121	0.85[ASN][1000 genomes]
rs67619349	0.90[ASN][1000 genomes]
rs6834370	0.90[ASN][1000 genomes]
rs6841865	0.85[ASN][1000 genomes]
rs6846803	0.84[ASN][1000 genomes]
rs6847185	0.85[ASN][1000 genomes]
rs6847509	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6851962	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6852823	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71610104	0.81[ASN][1000 genomes]
rs71610105	0.81[ASN][1000 genomes]
rs9637631	0.90[ASN][1000 genomes]
rs9993806	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv470069	chr4:125807868-125850998	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv879887	chr4:125816783-125847530	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879888	chr4:125816783-125850022	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv879889	chr4:125816783-125853748	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv524519	chr4:125826626-125842087	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv879890	chr4:125828458-125850022	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv879891	chr4:125828458-125850998	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125824200-125833400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:125826400-125834800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:125832200-125834200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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