Variant report

Variant	rs6852679
Chromosome Location	chr4:110804414-110804415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10857002	0.91[CEU][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11736783	0.96[EUR][1000 genomes]
rs11937583	0.94[EUR][1000 genomes]
rs13117220	0.93[EUR][1000 genomes]
rs2078038	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2078039	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3813825	1.00[YRI][hapmap]
rs4698752	0.90[AMR][1000 genomes]
rs4698753	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4698798	0.82[CEU][hapmap]
rs6839680	0.91[CEU][hapmap]
rs7654326	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7669266	0.97[EUR][1000 genomes]
rs7687956	0.85[EUR][1000 genomes]
rs7700220	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9918080	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110800400-110807600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr4:110800600-110807400	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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