Variant report

Variant	rs4698798
Chromosome Location	chr4:110792629-110792630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1000954	1.00[YRI][hapmap]
rs10857002	0.93[CEU][hapmap];0.87[LWK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12498247	1.00[YRI][hapmap]
rs17610314	1.00[YRI][hapmap]
rs1978231	0.92[EUR][1000 genomes]
rs2078038	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2078039	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3813825	1.00[YRI][hapmap]
rs4626205	1.00[YRI][hapmap]
rs4698752	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4698753	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6839680	1.00[YRI][hapmap]
rs6852679	0.82[CEU][hapmap]
rs7654326	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7700220	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs881878	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110780400-110795000	Weak transcription	Esophagus	oesophagus
2	chr4:110786200-110796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:110789600-110794800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:110789600-110795800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:110789800-110793600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:110789800-110798400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:110790400-110792800	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:110791400-110793800	Weak transcription	Pancreas	Pancrea
9	chr4:110791600-110793200	Weak transcription	Adipose Nuclei	Adipose
10	chr4:110791600-110793200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:110791600-110793600	Weak transcription	Aorta	Aorta
12	chr4:110791600-110795600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:110791800-110793600	Weak transcription	Gastric	stomach
14	chr4:110791800-110794000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:110791800-110795400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:110791800-110797200	Weak transcription	Primary T cells from cord blood	blood
17	chr4:110791800-110799600	Weak transcription	Brain Angular Gyrus	brain
18	chr4:110792000-110793000	Weak transcription	Lung	lung
19	chr4:110792000-110794000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links