Variant report

Variant	rs1978231
Chromosome Location	chr4:110798593-110798594
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10857002	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs11736783	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11937583	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13117220	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2078038	0.81[EUR][1000 genomes]
rs2078039	0.81[EUR][1000 genomes]
rs4698753	0.84[EUR][1000 genomes]
rs4698798	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6852679	0.83[CEU][hapmap]
rs7654326	0.81[EUR][1000 genomes]
rs7669266	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7687956	0.90[AMR][1000 genomes]
rs7700220	0.81[EUR][1000 genomes]
rs9918080	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110791800-110799600	Weak transcription	Brain Angular Gyrus	brain
2	chr4:110796200-110800200	Weak transcription	Psoas Muscle	Psoas
3	chr4:110796600-110798600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:110796600-110798600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:110796600-110800200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:110797600-110799600	Weak transcription	Pancreas	Pancrea
7	chr4:110798400-110798600	Enhancers	GM12878-XiMat	blood
8	chr4:110798400-110798800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr4:110798400-110799000	Enhancers	Fetal Heart	heart
10	chr4:110798400-110799200	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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