Variant report

Variant	rs4698753
Chromosome Location	chr4:110789465-110789466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10857002	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736783	0.82[EUR][1000 genomes]
rs11937583	0.80[EUR][1000 genomes]
rs1978231	0.84[EUR][1000 genomes]
rs2078038	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078039	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698752	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4698798	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6852679	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7654326	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7669266	0.82[EUR][1000 genomes]
rs7700220	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9918080	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110780400-110795000	Weak transcription	Esophagus	oesophagus
2	chr4:110786000-110791000	Weak transcription	Primary T cells from cord blood	blood
3	chr4:110786200-110796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:110786400-110790600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:110786600-110791200	Weak transcription	Lung	lung
6	chr4:110787200-110790800	Weak transcription	Brain Angular Gyrus	brain
7	chr4:110787400-110790600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:110787800-110790000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr4:110787800-110790600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:110788200-110790800	Weak transcription	Aorta	Aorta
11	chr4:110789000-110790600	Weak transcription	Pancreas	Pancrea
12	chr4:110789000-110790800	Weak transcription	Adipose Nuclei	Adipose
13	chr4:110789200-110790800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:110789200-110791200	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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