Variant report

Variant	rs6859134
Chromosome Location	chr5:145373271-145373272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr5:145373140-145373290	GM12868	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000248493	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs61733334	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61734248	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580400	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580401	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6875396	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6892368	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6895075	0.90[AFR][1000 genomes]
rs6896263	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145362200-145399200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:145362600-145404400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:145364400-145385800	Weak transcription	Pancreas	Pancrea
4	chr5:145368400-145386600	Weak transcription	HepG2	liver
5	chr5:145369400-145393400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:145369600-145393400	Weak transcription	NH-A	brain
7	chr5:145370000-145375600	Weak transcription	Liver	Liver
8	chr5:145370000-145392800	Weak transcription	Colonic Mucosa	Colon
9	chr5:145370800-145375600	Weak transcription	NHEK	skin
10	chr5:145370800-145386400	Weak transcription	Gastric	stomach
11	chr5:145371000-145380800	Weak transcription	Stomach Mucosa	stomach
12	chr5:145371000-145384800	Weak transcription	Osteobl	bone
13	chr5:145371400-145373600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:145372000-145380200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr5:145372600-145373400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:145372600-145373400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
17	chr5:145372600-145373400	ZNF genes & repeats	Esophagus	oesophagus
18	chr5:145372600-145373400	ZNF genes & repeats	Fetal Intestine Large	intestine
19	chr5:145372600-145374800	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr5:145372600-145377600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:145372800-145373400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr5:145372800-145373400	ZNF genes & repeats	Fetal Stomach	stomach
23	chr5:145372800-145373400	ZNF genes & repeats	Left Ventricle	heart
24	chr5:145373000-145373400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:145373000-145373400	ZNF genes & repeats	Aorta	Aorta
26	chr5:145373000-145376600	Weak transcription	HMEC	breast
27	chr5:145373200-145375600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr5:145373200-145385600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr5:145373200-145406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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