Variant report
| Variant | rs6580400 |
|---|---|
| Chromosome Location | chr5:145375078-145375079 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:145362200-145399200 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 2 | chr5:145362600-145404400 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
| 3 | chr5:145364400-145385800 | Weak transcription | Pancreas | Pancrea |
| 4 | chr5:145368400-145386600 | Weak transcription | HepG2 | liver |
| 5 | chr5:145369400-145393400 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 6 | chr5:145369600-145393400 | Weak transcription | NH-A | brain |
| 7 | chr5:145370000-145375600 | Weak transcription | Liver | Liver |
| 8 | chr5:145370000-145392800 | Weak transcription | Colonic Mucosa | Colon |
| 9 | chr5:145370800-145375600 | Weak transcription | NHEK | skin |
| 10 | chr5:145370800-145386400 | Weak transcription | Gastric | stomach |
| 11 | chr5:145371000-145380800 | Weak transcription | Stomach Mucosa | stomach |
| 12 | chr5:145371000-145384800 | Weak transcription | Osteobl | bone |
| 13 | chr5:145372000-145380200 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 14 | chr5:145372600-145377600 | Strong transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 15 | chr5:145373000-145376600 | Weak transcription | HMEC | breast |
| 16 | chr5:145373200-145375600 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 17 | chr5:145373200-145385600 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 18 | chr5:145373200-145406800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 19 | chr5:145373400-145378600 | Weak transcription | Duodenum Mucosa | Duodenum |
| 20 | chr5:145373400-145392800 | Weak transcription | Esophagus | oesophagus |
| 21 | chr5:145373400-145396800 | Weak transcription | Left Ventricle | heart |
| 22 | chr5:145373400-145408800 | Weak transcription | Aorta | Aorta |
| 23 | chr5:145373400-145428400 | Weak transcription | Fetal Stomach | stomach |
| 24 | chr5:145374400-145376600 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
| 25 | chr5:145374600-145375600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 26 | chr5:145374800-145376400 | Genic enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 27 | chr5:145374800-145378600 | Weak transcription | Fetal Intestine Small | intestine |
| 28 | chr5:145375000-145378600 | Weak transcription | Fetal Intestine Large | intestine |
