Variant report

Variant	rs9325001
Chromosome Location	chr5:145393315-145393316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10477287	1.00[MEX][hapmap]
rs6580400	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs6875396	1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap]
rs6892368	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs7725012	1.00[MEX][hapmap]
rs7725038	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145362200-145399200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:145362600-145404400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:145369400-145393400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:145369600-145393400	Weak transcription	NH-A	brain
5	chr5:145373200-145406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:145373400-145396800	Weak transcription	Left Ventricle	heart
7	chr5:145373400-145408800	Weak transcription	Aorta	Aorta
8	chr5:145373400-145428400	Weak transcription	Fetal Stomach	stomach
9	chr5:145379400-145412200	Weak transcription	Right Ventricle	heart
10	chr5:145385400-145398400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:145385800-145396600	Weak transcription	Osteobl	bone
12	chr5:145386800-145405400	Weak transcription	Small Intestine	intestine
13	chr5:145387800-145404200	Weak transcription	HepG2	liver
14	chr5:145388000-145404400	Weak transcription	Stomach Mucosa	stomach
15	chr5:145392200-145397200	Strong transcription	Fetal Intestine Large	intestine
16	chr5:145392200-145397200	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr5:145392200-145398000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:145392200-145398000	Strong transcription	NHEK	skin
19	chr5:145392200-145404600	Weak transcription	Hela-S3	cervix
20	chr5:145392400-145396800	Weak transcription	Adipose Nuclei	Adipose
21	chr5:145392600-145396200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:145392600-145397200	Strong transcription	Liver	Liver
23	chr5:145392600-145397800	Strong transcription	HMEC	breast
24	chr5:145392600-145398000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr5:145392600-145398600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:145392800-145393800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:145392800-145393800	Strong transcription	Esophagus	oesophagus
28	chr5:145392800-145393800	Strong transcription	Gastric	stomach
29	chr5:145392800-145394600	Strong transcription	Colonic Mucosa	Colon
30	chr5:145392800-145395600	Strong transcription	Fetal Intestine Small	intestine
31	chr5:145392800-145397400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr5:145392800-145397400	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr5:145392800-145406600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr5:145393200-145393600	Strong transcription	Sigmoid Colon	Sigmoid Colon

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