Variant report

Variant	rs7725038
Chromosome Location	chr5:145388180-145388181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145386463..145388626-chr5:145393441..145395252,2	MCF-7	breast:

rs_ID	r²[population]
rs6580400	0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs6875396	0.96[MKK][hapmap];0.94[YRI][hapmap]
rs6892368	0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs9325001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145362200-145399200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:145362600-145404400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:145369400-145393400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:145369600-145393400	Weak transcription	NH-A	brain
5	chr5:145370000-145392800	Weak transcription	Colonic Mucosa	Colon
6	chr5:145373200-145406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:145373400-145392800	Weak transcription	Esophagus	oesophagus
8	chr5:145373400-145396800	Weak transcription	Left Ventricle	heart
9	chr5:145373400-145408800	Weak transcription	Aorta	Aorta
10	chr5:145373400-145428400	Weak transcription	Fetal Stomach	stomach
11	chr5:145379400-145389400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:145379400-145412200	Weak transcription	Right Ventricle	heart
13	chr5:145380000-145389000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:145381400-145388800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:145381600-145392200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr5:145385400-145398400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:145385800-145396600	Weak transcription	Osteobl	bone
18	chr5:145386200-145389000	Enhancers	Fetal Intestine Large	intestine
19	chr5:145386600-145388600	Enhancers	Duodenum Mucosa	Duodenum
20	chr5:145386600-145392600	Weak transcription	HMEC	breast
21	chr5:145386800-145392800	Weak transcription	Gastric	stomach
22	chr5:145386800-145393200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr5:145386800-145405400	Weak transcription	Small Intestine	intestine
24	chr5:145387000-145389200	Enhancers	Fetal Intestine Small	intestine
25	chr5:145387000-145392200	Weak transcription	NHEK	skin
26	chr5:145387600-145388600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr5:145387800-145404200	Weak transcription	HepG2	liver
28	chr5:145388000-145392600	Weak transcription	Liver	Liver
29	chr5:145388000-145392800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr5:145388000-145404400	Weak transcription	Stomach Mucosa	stomach

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